GenePattern Notebook

Integrating genomic analyses with interactive notebooks

Check out our Notebook Library

Use GenePattern Notebook

Hundreds of genomic analysis tools available from within a notebook, no programming required

Executable notebooks based on and compatible with Jupyter Notebooks, accessible through a browser, no installation required

Browse a collection of genomic and machine learning notebooks and adapt them for your own use

Share a notebook with a collaborator or publish it in our library

Develop notebooks within separate customizable environments

Ensure reproducibility of your methods by adding a link to your notebook in a publication

Try our beta version of GenePattern Notebook on JupyterLab

Easy access to web-based genomic resources from within a notebook

pip install genepattern-notebook
conda install -c genepattern genepattern-notebook

	"GenePattern Notebook is a great tool for researchers with large molecular datasets and makes it easy to get started on your data analysis"
	"Informatics Technology for Cancer Research Program Drives and Fosters Community of Cancer Informatics Researchers: An *AMARETTO Tool Success Story"
	"GenePattern Notebook for analysis and exploration of single-cell transcriptomic data"
	"GenePattern Notebook: Integration of Electronic Notebooks with Bioinformatics Tools for Genomic Data Analysis"
	"TechBlog: Jupyter powers bioinformatics, again"
	"GenePattern Notebook Environment Needs Only A Web Browser To Run Analyses"
	"Broad's GenePattern Now Has 'Notebook' Aggregation, Collaboration Features"

GenePattern Notebook is developed in the lab of Jill Mesirov at University of California, San Diego